SNP Profiles of IMC 54 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AG	CG	TT	TT	CC	TT	TT	CC	CC	AA	GG	CT	AA
1._IMC_54	CC	AG	CG	TT	TT	CC	TT	TT	CC	CC	AA	GG	CT	AA
2._IMC_54	CC	AG	CG	TT	TT	CC	TT	TT	CC	CC	AA	GG	CT	AA
3._IMC_54	CC	AG	CG	TT	TT	CC	TT	TT	CC	CC	AA	GG	CT	AA
4._IMC_54	CC	AG	CG	TT	TT	CC	TT	TT	CC	CC	AA	GG	CT	AA
5._GC-04-018-1-18	CC	AG	CG	TT	TT	CC	TT	TT	CC	CC	AA	GG	CT	AA
6._GC-04-018-1-18	CC	AG	CG	TT	TT	CC	TT	TT	CC	CC	AA	GG	CT	AA
7._GC-04-018-1-18	CC	AG	CG	TT	TT	CC	TT	TT	CC	CC	AA	GG	CT	AA
8._GC-04-018-1-18	CC	AG	CG	TT	TT	CC	TT	TT	CC	CC	AA	GG	CT	AA
9._GC-04-018-1-18	CC	AG	CG	TT	TT	CC	TT	TT	CC	CC	AA	GG	CT	AA
10._RUQ_11	_	_	CG	_	_	_	_	TT	_	CC	_	GG	_	AA
11._RUQ_11	CC	AG	CG	_	TT	CC	TT	TT	CC	CC	AA	GG	CT	AA
12._RUQ_11	_	AG	CG	TT	_	_	_	TT	_	_	_	_	CT	AA
13._IMC_54	_	GG	CG	TT	_	CC	TT	GT	CT	_	AT	GG	CT	AA
14._GC-04-18-1-18	GG	AG	CG	AA	AA	CC	AA	AA	_	_	AA	GG	AG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AT	GG	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC
1._IMC_54	TT	AT	GG	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC
2._IMC_54	TT	AT	GG	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC
3._IMC_54	TT	AT	GG	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC
4._IMC_54	TT	AT	GG	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC
5._GC-04-018-1-18	TT	AT	GG	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC
6._GC-04-018-1-18	TT	AT	GG	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC
7._GC-04-018-1-18	TT	AT	GG	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC
8._GC-04-018-1-18	TT	AT	GG	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC
9._GC-04-018-1-18	TT	AT	GG	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC
10._RUQ_11	_	_	_	_	_	CC	GG	AA	_	AA	GG	_	_	CC
11._RUQ_11	TT	AT	GG	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC
12._RUQ_11	_	_	_	_	TT	CC	GG	_	CC	AA	GG	GT	CT	CC
13._IMC_54	TT	TT	GG	CT	CT	CC	GT	AA	CC	AC	GG	GG	CC	CC
14._GC-04-18-1-18	AA	AT	GG	GG	AG	GG	CC	_	GG	AA	GG	AC	_	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	TT	AG	CC	AA	CT	GT	CC	TT	GG	X_X	X_X
1._IMC_54	AA	GG	AA	TT	AG	CC	AA	CT	GT	CC	TT	GG	X_X	X_X
2._IMC_54	AA	GG	AA	TT	AG	CC	AA	CT	GT	CC	TT	GG	X_X	X_X
3._IMC_54	AA	GG	AA	TT	AG	CC	AA	CT	GT	CC	TT	GG	X_X	X_X
4._IMC_54	AA	GG	AA	TT	AG	CC	AA	CT	GT	CC	TT	GG	X_X	X_X
5._GC-04-018-1-18	AA	GG	AA	TT	AG	CC	AA	CT	GT	CC	TT	GG	X_X	X_X
6._GC-04-018-1-18	AA	GG	AA	TT	AG	CC	AA	CT	GT	CC	TT	GG	X_X	X_X
7._GC-04-018-1-18	AA	GG	AA	TT	AG	CC	AA	CT	GT	CC	TT	GG	X_X	X_X
8._GC-04-018-1-18	AA	GG	AA	TT	AG	CC	AA	CT	GT	CC	TT	GG	X_X	X_X
9._GC-04-018-1-18	AA	GG	AA	TT	AG	CC	AA	CT	GT	CC	TT	GG	X_X	X_X
10._RUQ_11	_	_	_	_	AG	_	_	_	_	CC	_	_	X_X	X_X
11._RUQ_11	AA	AG	AA	CT	AG	CC	AC	CT	GT	_	TT	GG	X_X	X_X
12._RUQ_11	AA	_	AA	TT	AG	CC	AC	CT	GT	CC	_	_	X_X	X_X
13._IMC_54	AA	AG	AT	CT	GG	_	AC	_	GT	CC	AT	CG	X_X	X_X
14._GC-04-18-1-18	_	GG	AA	AA	AG	GG	AC	AG	AC	CC	TT	GG	X_X	X_X

Input profile: IMC_54

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Mars Center for Cocoa Science, Brazil

Location: 4118 4 > FP

Dapeng Zhang, 2016

1._IMC_54

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4118 6 > FP

Dapeng Zhang, 2016

2._IMC_54

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4118 5 > FP

Dapeng Zhang, 2016

3._IMC_54

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4118 3 > FP

Dapeng Zhang, 2016

4._IMC_54

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4118 7

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

5._IMC_54 GC-04-018-1-18

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

6._IMC_54 GC-04-018-1-18

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

7._IMC_54 GC-04-018-1-18

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP2

8._IMC_54 GC-04-018-1-18

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP1

9._IMC_54 GC-04-018-1-18

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

10._IMC_54 RUQ_11

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

11._IMC_54 RUQ_11

96.1 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

12._IMC_54 RUQ_11

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

13._IMC_54

75.7 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D311

Dapeng Zhang, 2016

14._IMC_54 GC-04-18-1-18

50 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 4, Block: 1, Rep: 18, Tree: 7

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25